rs47082538 SNP Detail

Summary

• ID
  rs47082538
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119074458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTT GTGTACGAAA TATGCGTGTG
  S
  ATGCACACAT TTGTGTATGG ATGTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147327111	ENSMUSSNP2710919	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320474388	CHEV_2_119069713	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47082538					SNP	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119074458 () rs orientation: forward

Symbol	Name	Function Class
Rr563452	regulatory region 563452	1061 bp distal
Rr563453	regulatory region 563453	955 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	Intron