rs47082512 SNP Detail

Summary

• ID
  rs47082512
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150205866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAT TTTTTTTTCC
  TTTCTCTTCC AAACTCACAG TGTAAGTAGG GATTAGGTGT AGATTTCCTT GGTTGAGAAA
  AATTTCCAGC GCCAAGAAGG TAACATGAGC TGGGCAGTGG TAGCGCACGC CTTTAGTCCC
  AGCACTTGGG AGGCAGAGGC AGGTGGATTT CTGAGTTCAG GGCCAGCCTG GTCTACAGAG
  Y
  GAGTTCCAGG AAAGCCAGGG CTATACAGAG AAACCCTGTC TCGAAAAAAA AAAAAAAACC
  AAACAAACAA AAAAATGTTA CATGAATTGA TGAACACATT CAAGGAATTT GCATTTTAAT
  CCTTCCCACG GCGTTTGTTT GTATGTGGCT AGGGAGGAGC AGGCATCTGT GCAAAATATT
  ATTTACCAAG GTCCGTAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148048067	ENSMUSSNP2917484	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47082512					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150205866 () rs orientation: forward

Symbol	Name	Function Class
Rr605188	regulatory region 605188	1917 bp distal
Rr605189	regulatory region 605189	436 bp distal
Rr605190	regulatory region 605190	684 bp proximal
Slc2a5	solute carrier family 2 (facilitated glucose transporter), member 5	Intron
Tssr40374	transcription start site region 40374	704 bp downstream