rs47080768 SNP Detail

Summary

• ID
  rs47080768
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149300497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTCTCAA TCCTTCTGTC
  TTAGCTTTCC TACTAACTGA GATTACAGGC CTGAGATACC AGACCTGGCT GACACTTGAT
  ATATTTCTAA CAAACTAGAC AAGTCCTACC ATGTTTGTGC TTTTAAAAGG TTCATTAATT
  TGTAGAAATT CTTTTTTTTT TAATTTAATA TGCTCTTACT CAACTGTATA TACATGTGTG
  S
  GTGCATGTGT CTGCTTCTGT GTGTGTGTGT GTGTGTGTGT GCCCGCGCAT ATGCACGCGC
  GTGTGTTTTG CAGGTGAGGG GATAATGTGC ACACAGAGCG TGGAGGATGG AAAACAGCCG
  TGGAAAGGTC TGTACTTTCT TTCTACCATG TGAGTCACAT GCACCAAAGC CAGGTGGTTG
  ACATGGTAGG AAATGACGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148029660	ENSMUSSNP1852694	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47080768					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149300497 () rs orientation: forward

Symbol	Name	Function Class
Kif1b	kinesin family member 1B	Intron
Rr604862	regulatory region 604862	255 bp distal
Rr604863	regulatory region 604863	31 bp proximal
Tssr44639	transcription start site region 44639	1844 bp upstream