rs47075990 SNP Detail

Summary

• ID
  rs47075990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165436563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATCTTCA AAAAGAAACC
  TTGCGTTGGG GGGTGGGGGG AGAGCTATTG ACAAAAACAG TACTGCTGAC CTCTGGCCTA
  ATACATACAC GCTCACCCTC ACACTCACAC TTTCCTGTAA TTGAGGTGAC ACCTCCACAG
  AGACATCTTC CTGGACCGCT CTGCTGCCCG GCCACCCACA AGCCCTTCTT TCCCTCTCCT
  Y
  GGTATTTACA ACTTTCTTCA GCTGCCTTTT TCCCTGGATT CTTTGTTCGT GATTCCCACT
  CTCAACGTGG ATGCAAAGTT CCAGGATGAC AGAAAACGAG TTGGTCTTAT TGTAGTGGAG
  CAGTTGACCA GGCACGGACA GTCGAGTGGA TGGAGGATGG ATGGATGAAT GAATGAATGG
  ATGGATGGAT GGATGGATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148241326	ENSMUSSNP7198602	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320608373	CHEV_2_165420143	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47075990					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165436563 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	within coordinates
Eya2	EYA transcriptional coactivator and phosphatase 2	389 bp upstream
Rr569954	regulatory region 569954	689 bp distal
Rr569955	regulatory region 569955	within coordinates
Rr569956	regulatory region 569956	400 bp proximal
Rr569957	regulatory region 569957	571 bp proximal
Rr569958	regulatory region 569958	748 bp proximal
Tssr21727	transcription start site region 21727	366 bp upstream
Tssr21728	transcription start site region 21728	1528 bp upstream