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rs47075990 SNP Detail
Summary
  • ID
    rs47075990
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:165436563 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCATCTTCA AAAAGAAACC
    TTGCGTTGGG GGGTGGGGGG AGAGCTATTG ACAAAAACAG TACTGCTGAC CTCTGGCCTA
    ATACATACAC GCTCACCCTC ACACTCACAC TTTCCTGTAA TTGAGGTGAC ACCTCCACAG
    AGACATCTTC CTGGACCGCT CTGCTGCCCG GCCACCCACA AGCCCTTCTT TCCCTCTCCT
    Y
    GGTATTTACA ACTTTCTTCA GCTGCCTTTT TCCCTGGATT CTTTGTTCGT GATTCCCACT
    CTCAACGTGG ATGCAAAGTT CCAGGATGAC AGAAAACGAG TTGGTCTTAT TGTAGTGGAG
    CAGTTGACCA GGCACGGACA GTCGAGTGGA TGGAGGATGG ATGGATGAAT GAATGAATGG
    ATGGATGGAT GGATGGATGG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
LG/J
SM/J
ss148241326 ENSMUSSNP7198602 ENSEMBL ENSEMBL_Sanger f SNP T T
ss320608373 CHEV_2_165420143 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
LG/J
SM/J
rs47075990 SNP T T T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:165436563 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12713 CpG island 12713 within coordinates
Eya2 EYA transcriptional coactivator and phosphatase 2 389 bp upstream
Rr569954 regulatory region 569954 689 bp distal
Rr569955 regulatory region 569955 within coordinates
Rr569956 regulatory region 569956 400 bp proximal
Rr569957 regulatory region 569957 571 bp proximal
Rr569958 regulatory region 569958 748 bp proximal
Tssr21727 transcription start site region 21727 366 bp upstream
Tssr21728 transcription start site region 21728 1528 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory