rs47071927 SNP Detail

Summary

• ID
  rs47071927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:140460964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGTACTG TTTTTCTAGT
  GTGAAAAATG CAAAGACATT GAAACTAGTT GATGCCTAGG TCAGGGTTAA TGGTAAACAT
  CTCTTTCTTT AATTTGCAGG GAAGATGCCA GTCAATACAT TTTACAGAAA CAAGAATGAA
  AACTGACCAA AAAAGTTCAC AACTACTTAT ACCCCAGTTT TTCTAGTTAC CTCATAGAGA
  Y
  AAAGAAACTT GTTCTATTCA ATTTCTTGTT AAAAAATTGT CTTAATACAA ACACACACAC
  ACACACACAC ACACACACAC ACACACACAG AGTCACACAC ACACACACCC TACTCATTGT
  AATTCAGGAA CAATTGACAG TTAAATAGAG GTATCTATCT TTCTGACTAT TTATCTATCT
  AAATATGGAC ATTTATAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60810264	NES16487178	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47071927					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60810264	NES16487178	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:140460964 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnt2	potassium channel, subfamily T, member 2			Intron
				Noncoding-Transcript-Variant
Rr419878	regulatory region 419878			1393 bp distal
Rr419879	regulatory region 419879			1490 bp distal
Rr419880	regulatory region 419880			855 bp distal