rs47065049 SNP Detail

Summary

• ID
  rs47065049
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:15639924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGCCTGCAA ACTATTCCTG CTTCCTTTGG CAAAGAAATA
  AAAATTTTCA GTCTAGGGAG CTTCAATGTA GCACATGAAT ATTACATTTA AAAAAAAAGA
  R
  AGAGAACTCG ATTTAAACTG TTTCAAACAG GGAGGGGATT GGAGGGAGCT GAGAGAAGAG
  GACATGCCAG GCAATGTGCT CTGGCTCCCT GGAGTGTACC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss60865395	NES15989607	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs47065049					SNP	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60865395	NES15989607	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15639924 () rs orientation: forward

Symbol	Name	Function Class
Gm36352	predicted gene, 36352	168 bp upstream
Gm44039	predicted gene, 44039	1556 bp downstream
Rr626670	regulatory region 626670	704 bp distal
Rr626671	regulatory region 626671	within coordinates