rs47064520 SNP Detail

Summary

• ID
  rs47064520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135002427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGTAAAG TAAGAAAAGC
  CAGCAGGCTG TCCTGTGGAG CAAAGCTTAA ACCAGAAACA AATAGAAGGG ACAGCTGGAC
  TCTGAACTGG GTCCCCTGTT AATTTTTCAC AGAACTGTGA ACAGATTAAA GTCCCCTCAC
  AGTATAGCCT TTCCACCGTG ATCCCAAATG GTAAATTCAA ACAGACACAC ACTTAAAATG
  R
  CCCAGCAGAG CCTCAAAAGA CTCCACATTG GCCCCAAGAC TACTGGGTCC CAGTTAGGAT
  TTATCCAAGT CATTTTGGGT CCCCAAATTA CTCCCTCACA TGTATCTGTG CTGGGCCCAT
  GCTGGCTCCC AGCCACCAGC ACAGAGATGG CCCACACAGG GAAACAATAG CAATGAAAGG
  GTCTTTCTGT CTCTTTGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147543373	ENSMUSSNP1426406	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47064520					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135002427 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15068	CpG island 15068	1493 bp distal
Rr398589	regulatory region 398589	1925 bp downstream
Rr601980	regulatory region 601980	1812 bp distal
Rr601981	regulatory region 601981	1987 bp distal
Rr601982	regulatory region 601982	within coordinates
Rr601983	regulatory region 601983	1698 bp proximal