rs47059313 SNP Detail

Summary

• ID
  rs47059313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116836724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGAGAGA CACAGATTGG
  GTGTAGTCGC AAGTAGTGAT CCTGTAGTGT TTCAGTTTGC TCTAAGGTAA CCCAGGGAAC
  CTGAAATATC TAGTTATGGA TTGTGCTATT TGATATTGAT TGTTGATGTG ACAAGACCTG
  GACTCATTTG GGATACAAAC CTCTGGGGGT TTCTATGAAG CGTTACCTAG GTTAGGTTAG
  Y
  TGAGATGGGA AGATTCATTC TGTGAGTGCA TCCATGCCAT GAACTGGGGT CTCCGACTGA
  GTAAAAAGAA GGAAGGCATC TACACTTTAA TATTTATCGA TCTGTGTTCT CTCTTCGGAA
  GCAATGTGAC CTGTCACCTT ATGCTTCCTG CCACCCTGAC TTCACCATCC TGATCAACTA
  TAATGGAGCC AAAATAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135679915	ENSMUSSNP512656	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47059313					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116836724 () rs orientation: forward

Symbol	Name	Function Class
Rr583826	regulatory region 583826	1223 bp proximal