rs47054247 SNP Detail

Summary

• ID
  rs47054247
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121163845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTGGCCTC AAACTCAGAA ATCCGCCTGC CTCTGCCTCC
  CCAGTGCTGG GATTAAAGGC ATGCGCCACC GCTGCCCGAC TGGATTTATT TTCGTTGCTC
  R
  TGTTAACACT TTATCTATCT TTGCCAGCCC TACTTTTAGA ACTTAAAATT GTTCAATGAT
  TTATTTCTTT TTAACATTGG GGGTGTGTGT GTGAATGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60440593	NES15939072	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47054247					SNP	G	G	G	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60440593	NES15939072	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121163845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13757	CpG island 13757	265 bp proximal
Gm33363	predicted gene, 33363	within coordinates
Rr397973	regulatory region 397973	426 bp downstream
Rr397974	regulatory region 397974	within coordinates
Rr584057	regulatory region 584057	577 bp distal
Rr584058	regulatory region 584058	149 bp distal
Rr584059	regulatory region 584059	12 bp proximal
Rr584060	regulatory region 584060	1118 bp proximal
Tssr31438	transcription start site region 31438	598 bp downstream
Tssr31439	transcription start site region 31439	537 bp downstream