rs47052456 SNP Detail

Summary

• ID
  rs47052456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:24375879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATATTTT GTTACAGTAT
  TAATATTCTT TTTCTTTAGG GCTCATGTAG CTCGGGCTTT CCTTACACAC ACTGTGTAAC
  TAGGAATGAC TATGAATTCC TGATACTCAG GCATCTTCTT CTCATTGTCT AGGATTACAG
  GCATCCTGTT CAGGGGATGC AGCACAGCCT CATGGGTACC ACAAGGGGGC ATTCCACCAA
  Y
  TTACCTAAAC CCGTAGACCT CACTATAGTC ACATTTGCTC AGGACTAGTT TGTGCTAGTA
  GCAAGCTAGA TGCTGTAAGG AGTTAAAACT ATCATGTAGG GCATTGACTT CGACGATTTA
  ATCATGCCAG TCACTGTCTT TTCCATGATT CACTGTTTAC ACAGAAGCAA GCATAGTCAT
  GCTCACCAAT GTTCTTTCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss134688482	ENSMUSSNP384098	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs47052456					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:24375879 () rs orientation: forward

Symbol	Name	Function Class
Naaladl2	N-acetylated alpha-linked acidic dipeptidase-like 2	Intron
Rr574259	regulatory region 574259	5 bp distal