rs47050750 SNP Detail

Summary

• ID
  rs47050750
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90565235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAT GTATTTCTTC TTAGGTGTGT
  R
  CACATGCATA CAAACAATAT CACAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60424112	NES15930497	PERLEGEN	MM_PANEL2	f	SNP		G	G	A	G	A	A	G	A		A	G	A		A
ss135478335	ENSMUSSNP7205712	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320838513	CHEV_3_90461850	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47050750					SNP	A	G	G	A	G	A	A	G	A	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424112	NES15930497	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90565235 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57853	predicted gene, 57853			mRNA-UTR
				Noncoding-Transcript-Variant
S100a7a	S100 calcium binding protein A7A			mRNA-UTR
Tssr30264	transcription start site region 30264			1723 bp upstream
Tssr34247	transcription start site region 34247			1495 bp downstream
Tssr34248	transcription start site region 34248			1513 bp downstream