rs47050680 SNP Detail

Summary

• ID
  rs47050680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7831426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAAGACTT TCTCAATGCC
  TTGGTAGATT TCTGAAGGTG TGGCTATTAT GAATAAAGAT CATTTAGAAC TTTCCAGAGG
  GGAGGGGATG CTCTGTGGGA AGGATTTTGT CCCGGCACCT TGGTTTCCTC AAGTTCATCT
  CTTGTTTCTG ATTTTGATAC TGCAAAGGGA TACTGAAGTT CTGTCTCTTT CTTAACATGC
  R
  TCTTCCTAGG CAGAGATCAC CCACAGCCAC AAACAAGCCA ATGTTTAGTT GAGGCAGTAG
  TTAGACAGAT TTGCTGCTAA ACAGATAGCT AAAAGGCAGA AGGCAAGAAA CAAGAATAAA
  GTAACTTTCT TTTACTCATT TCATGGTTGT GATGGTGGGG CCTTCCTCAT CTCTTCTCAG
  ATATGGCCCC AAATTAGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60861843	NES15993143	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	A	G	G	A	G
ss132955753	ENSMUSSNP5681681	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47050680					SNP	A	A	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60861843	NES15993143	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7831426 () rs orientation: forward

Symbol	Name	Function Class
Rr626323	regulatory region 626323	268 bp distal