rs47050058 SNP Detail

Summary

• ID
  rs47050058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32582158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGT TCCAGGGCTA CACAGAGAAA
  Y
  CCTGTCTCAA AAAGAAAAAA ATCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss134750129	ENSMUSSNP6603196	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320698372	CHEV_3_32426931	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47050058					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32582158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13058	CpG island 13058	1318 bp proximal
Gm66043	predicted gene, 66043	680 bp downstream
Mfn1	mitofusin 1	1456 bp upstream
Rr374786	regulatory region 374786	1100 bp downstream
Rr397636	regulatory region 397636	1243 bp upstream
Rr574980	regulatory region 574980	446 bp distal
Rr574981	regulatory region 574981	966 bp proximal
Rr574982	regulatory region 574982	1467 bp proximal
Rr574983	regulatory region 574983	1572 bp proximal
Tssr28756	transcription start site region 28756	1443 bp upstream
Tssr28757	transcription start site region 28757	1523 bp upstream
Tssr28758	transcription start site region 28758	1548 bp upstream
Tssr28759	transcription start site region 28759	1570 bp upstream
Tssr28760	transcription start site region 28760	1629 bp upstream