rs47045715 SNP Detail

Summary

• ID
  rs47045715
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:80945588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATTGGTT ATGGTTTTTC
  TCTTGAACTT TTTTTTTTTT TTTAAAACGT GCCTTTGTGC CCCGAAACCC TCACCTTTTG
  GTGGTGTATT TTTTTGTATG TTCATGAATG ACTATTTTGT GTGTGTTGGA AGCGATCTAA
  TCCTGCATAG GAAATGAGAA TTACTTTCAG CTTTCAAGTG TACCTGAAAT GTTTAGAAAA
  M
  TTTCAGATGC GAGTTCCCCT GGGCTGGGAT TGCACAGAGC TGGAGAAAAG CCTCTTTCAT
  AAGTCCAGGG AAGCTTCGGG GGTGTAATTT GCTTAGCCTC TGAACCCCAT ATGATTCACA
  GCATTCAATT TCTAAACTCC TTTGCTCTTG ATCTACCACT ATAAAGCCAT TTTTTGAGAC
  TCTTTTGTAA ATAGAAATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135389040	ENSMUSSNP5132271	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47045715					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80945588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13283	CpG island 13283	454 bp distal
Gm16000	predicted gene 16000	within coordinates
Gm64611	predicted gene, 64611	within coordinates
Pdgfc	platelet-derived growth factor, C polypeptide	Intron
Rr578682	regulatory region 578682	1855 bp distal
Rr578683	regulatory region 578683	1172 bp distal
Rr578684	regulatory region 578684	1821 bp distal
Rr578685	regulatory region 578685	1765 bp distal
Rr578686	regulatory region 578686	1313 bp distal
Rr578687	regulatory region 578687	609 bp distal
Rr578688	regulatory region 578688	291 bp distal
Rr578689	regulatory region 578689	566 bp proximal
Rr578690	regulatory region 578690	1092 bp proximal
Rr578691	regulatory region 578691	1279 bp proximal
Tssr29617	transcription start site region 29617	1910 bp downstream
Tssr29618	transcription start site region 29618	1543 bp downstream
Tssr29619	transcription start site region 29619	1270 bp downstream
Tssr29620	transcription start site region 29620	1205 bp downstream
Tssr29621	transcription start site region 29621	1076 bp downstream
Tssr29622	transcription start site region 29622	1056 bp downstream
Tssr29623	transcription start site region 29623	890 bp downstream