rs47042262 SNP Detail

Summary

• ID
  rs47042262
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:5152541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTGAGGA GAGAGAATTT
  AAGGTTTGTT TGTTGAAGCC CAGATGGATA GATAAATGAA TATAAGGCAA TGCTGTGATC
  AGTTAGACCA TATTGGCACC ATTCTCAAAT TAATCCAGAC ACTGAGACCT TCAACAAGGG
  TGACTCATGT TGTTTGTTTT GTTTTGTTTG TGTGCTTGTT TTTAATATAG TAACAAATAA
  Y
  GAATCTTATC TCTGAAAACG ATTGATTAGA ACTTTTTGTG AAATTTATTG CAAATTGTAG
  TGCTAATCAA GGAAAATAAA ATTGTGTGTA GCTCTTCTTT GAATTTAAAT TTTATTCAAT
  TATAAGCAGA TCTTTGGCTA GTGTTATACA ACCACATTCA TGGACACAAA AATATTTAAA
  ACTGACAAAA TATCCAATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60366984	NES15869418	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47042262					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60366984	NES15869418	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5152541 () rs orientation: forward

Symbol	Name	Function Class
D3Mit61	DNA segment, Chr 3, Massachusetts Institute of Technology 61	872 bp proximal
Rr573165	regulatory region 573165	1330 bp proximal