rs47039162 SNP Detail

Summary

• ID
  rs47039162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138611227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGTGTCTGTT CAGGTGCCCA TCCAGGTGTC CATCCAGGTG
  TCTGTGCAGG TGTCTGTGCA GGTGCTCATC CAGGTGTCCT TGCAGGTGTC TGTGCAGGTG
  Y
  CCATCCAGGT GTCCATGCAG GTGCCCATCC AGGTGTCCAT GCAAGTGTCT GTGCAGGTGC
  CCATCCAGGT ATGCATTCAG GTGTCCGTGC AGGTTAGCTG T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147659847	ENSMUSSNP2364472	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47039162					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138611227 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15156	CpG island 15156	1436 bp distal
Pla2g2e	phospholipase A2, group IIE	1102 bp downstream
Rr603039	regulatory region 603039	252 bp proximal
Rr603040	regulatory region 603040	566 bp proximal