rs47028962 SNP Detail

Summary

• ID
  rs47028962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:55018906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATT CTAATGAGAC AGAAGTTACA
  Y
  CTCATTTTGA TTTGAGTTAG CCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135186437	ENSMUSSNP4727364	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320774363	CHEV_3_54915407	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47028962					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55018906 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13184	CpG island 13184	430 bp proximal
Rr576901	regulatory region 576901	908 bp distal
Rr576902	regulatory region 576902	133 bp proximal
Rr576903	regulatory region 576903	522 bp proximal
Rr576904	regulatory region 576904	913 bp proximal
Spart	spartin	623 bp upstream
Tssr29147	transcription start site region 29147	595 bp upstream
Tssr29148	transcription start site region 29148	869 bp upstream
Tssr29149	transcription start site region 29149	892 bp upstream