rs47023649 SNP Detail

Summary

• ID
  rs47023649
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36667159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGG CCAAGTATTT ACCTTCTCTG
  R
  GCTCCTAATT CTTCATTTGC ACTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss134784803	ENSMUSSNP1682446	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320703507	CHEV_3_36511932	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47023649					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36667159 () rs orientation: forward

Symbol	Name	Function Class
Bbs7	Bardet-Biedl syndrome 7	Intron
Cpgi13088	CpG island 13088	86 bp proximal
Rr575383	regulatory region 575383	within coordinates
Rr575384	regulatory region 575384	265 bp proximal
Rr575385	regulatory region 575385	418 bp proximal
Tssr28874	transcription start site region 28874	472 bp upstream
Tssr33039	transcription start site region 33039	329 bp downstream
Tssr33040	transcription start site region 33040	360 bp downstream
Tssr33041	transcription start site region 33041	408 bp downstream
Tssr33042	transcription start site region 33042	451 bp downstream
Tssr33043	transcription start site region 33043	479 bp downstream