rs47023201 SNP Detail

Summary

• ID
  rs47023201
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57043569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTGCCCTTAA ATGTTTTGAC TTCTCTTAAG TATTTAAAAG
  CCTGCTGTGC ATCTGTGTCT GACTGGAAAG TGATGTACCA GTTGCTGTTG TGTGCAAACT
  Y
  GTAGCTTATC ACTTTGTGGC AGTTTTCATT TTTAAACAAA GCTTTCACTT CCTCTACAGG
  CGTGGTCCCA GGAATCTCTC TGAGAATCAC AATACATCGC T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135198902	ENSMUSSNP1484960	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47023201					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57043569 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13195	CpG island 13195	672 bp proximal
Gm8177	predicted gene 8177	within coordinates
Gm64707	predicted gene, 64707	929 bp upstream
Rr375016	regulatory region 375016	210 bp upstream
Rr577070	regulatory region 577070	638 bp proximal
Rr577071	regulatory region 577071	940 bp proximal