rs47022438 SNP Detail

Summary

• ID
  rs47022438
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76867472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCCTCAC TGAACCCCAA
  AGAGGCACAG ACCTGTCTGG CACAGAGATA ATCACAATCT TCCTCCACAC CCCCTCTACC
  TCCTTTACCT TGCCCTTCAG GCTGTAAGTA GTAAGTGGCC CGAGGGTGTA GATAACCAAC
  ACAGCCAGAT ATGGGAGCCT TCCAGCTCAC CCTAAAATTC CTCCAGCTAC CTGACCATCA
  W
  TTCCAAAGAA TGTGACATTT GTTCCTGTCC CTTTCAACTC ACAAGGACTT GCATTGCTGG
  ACCAAGTCTG GCGTGGTTAA TGGCAAGGGT CCTGCAGATT TCCCAGGCAG GAGGTGGGGG
  TAGCAGCCAG CCCCAAGAGC GCATGCATGC CTGCTGCCAA CTTGTAGAGA GGAGCCAGTG
  CGTTTTCCAA ACGTGCCATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52376021	NES15271662	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47022438					SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52376021	NES15271662	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76867472 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1753	CpG island 1753	828 bp proximal
Rr434375	regulatory region 434375	1573 bp distal
Rr434376	regulatory region 434376	556 bp proximal
Rr434377	regulatory region 434377	1015 bp proximal
Rr434378	regulatory region 434378	1084 bp proximal
Rr434379	regulatory region 434379	1358 bp proximal
Rr434380	regulatory region 434380	1505 bp proximal
Rr434381	regulatory region 434381	1641 bp proximal
Slc19a1	solute carrier family 19 (folate transporter), member 1	631 bp upstream
Tssr94203	transcription start site region 94203	592 bp upstream
Tssr94204	transcription start site region 94204	620 bp upstream
Tssr94205	transcription start site region 94205	1073 bp upstream
Tssr94206	transcription start site region 94206	1602 bp upstream
Tssr94207	transcription start site region 94207	1622 bp upstream
Tssr94208	transcription start site region 94208	1652 bp upstream
Tssr94209	transcription start site region 94209	1666 bp upstream