rs47020577 SNP Detail

Summary

• ID
  rs47020577
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124067559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTATTAT ATAATTAGCC
  ACTACTCTTT CCTTTCATCC CTCTAAACTT TCCATATAAC CTTCCTTGCT CCCTCTCAAT
  TGCATGGTGT CTTTTAAAGT TAACATATAT ATATATATAT ATATATATAT ATATATATAT
  ATATATATAT ATATATCCAT TCATGTGTGT GTGATATGCA TACTACAGTG TGGATGTGCA
  M
  AGCAGAGTAT GGATTCAGGG TGTCACTTTT CACTTTCCAC CCTGTTAGAG GCAAGGTCTC
  TCTTGTTTCT GTGACTGCCT GTAGATGAAC ACTGTAGCAT TTACCTTCTT ACATAGGTGC
  TGGGCTCTGA TTTCAGGTTG TCGAGTTTGC CCAGAAAGTA CTTTGCCCCA CTAAGCCCGC
  TCTCTGGCTC CAAATCAGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60445699	NES15938221	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47020577					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445699	NES15938221	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124067559 () rs orientation: forward

Symbol	Name	Function Class
Gm43731	predicted gene 43731	within coordinates
Rr584584	regulatory region 584584	550 bp distal
Rr584585	regulatory region 584585	985 bp proximal