rs47019775 SNP Detail

Summary

• ID
  rs47019775
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108040855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAT CAAGAGGATG GAGAGTTCAA
  G
  ACCACACTGG GTTTCATACT AATAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133494199	ENSMUSSNP597572	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321891473	CHEV_6_108013888	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47019775					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108040855 () rs orientation: forward

Symbol	Name	Function Class
Gm66771	predicted gene, 66771	within coordinates
Rr399804	regulatory region 399804	999 bp upstream
Rr399805	regulatory region 399805	1305 bp upstream
Rr399806	regulatory region 399806	1825 bp upstream
Rr636028	regulatory region 636028	330 bp proximal
Rr636029	regulatory region 636029	1078 bp proximal
Rr636030	regulatory region 636030	1404 bp proximal
Rr636031	regulatory region 636031	1909 bp proximal
Setmar	SET domain without mariner transposase fusion	1151 bp upstream
Tssr58052	transcription start site region 58052	1141 bp upstream