rs47017655 SNP Detail

Summary

• ID
  rs47017655
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43478651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGT GTCTGCCCCC AAACCATCCT
  Y
  CCTCCCTCCC ACACAATTGC CTGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146240235	ENSMUSSNP6592828	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321098282	CHEV_4_43491523	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47017655					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43478651 () rs orientation: forward

Symbol	Name	Function Class
Gm70652	predicted gene, 70652	within coordinates
Rr398231	regulatory region 398231	102 bp downstream
Rr590993	regulatory region 590993	1551 bp distal
Rr590994	regulatory region 590994	1845 bp distal
Rr590995	regulatory region 590995	1565 bp distal
Rr590996	regulatory region 590996	within coordinates
Rr590997	regulatory region 590997	261 bp distal
Rr590998	regulatory region 590998	127 bp proximal
Rr590999	regulatory region 590999	353 bp proximal
Rr591000	regulatory region 591000	405 bp proximal
Rr591001	regulatory region 591001	1016 bp proximal
Rr591002	regulatory region 591002	1552 bp proximal
Tssr41421	transcription start site region 41421	114 bp downstream