rs47017230 SNP Detail

Summary

• ID
  rs47017230
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19717065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACACTCC TCCTCCAATA
  AGGCCAGGCC TCCTAATCCT TCCAGAGAAA GTTCCACCAA GTAGGGACCA AGCATTCAAG
  TATATGAGCC TATGGGGACC ATTCTCGTTC AATCCATCAT ACTATGTATG CCTTTTAATT
  TTACAAATGC TATTGCATGA TAGTTTCTTT GTGTTTTGAA TCTAGAATTC TGTTTATAAG
  W
  TCCACACATA TTACTATCAG CGTGTCCAGT GACTTGGTTT CCTTTTCTGT GAAAAGGGGG
  CAATCACACT TATTCTGTAG AGATTACAGG CTCAATGAAG ATGCTCAGCA CAATATCTGG
  CATGAAGTGT GAGGTCTTAC TACTTTTCTA TTATCAAGGC AAAATCTATC ATAAGTCTAA
  GGCCATTTTC TAGAGGATGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60376667	NES15883787	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	A	A	T	A	A	A	A	A	A	A	A	A
ss134669618	ENSMUSSNP7037916	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47017230					SNP	A	A	T	A	A	A	T	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376667	NES15883787	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19717065 () rs orientation: forward

Symbol	Name	Function Class
Rr574018	regulatory region 574018	341 bp proximal
Rr574019	regulatory region 574019	1541 bp proximal
Trim55	tripartite motif-containing 55	Intron