rs47016516 SNP Detail

Summary

• ID
  rs47016516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127743171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCTGTT TATTGCTTAG
  TTTGTCTTTC TCCTGTTGCT TGAACGGGAT ATGTGCTCCT TCTTCGCTGA TCCAGGCTGC
  TAAGCCTCTC AGTCTCAGAT CTCAGAAGCT ACCTCTGCCT GATAGCAGGG AGGACCCTCT
  CTGTGTACAC TGTCCTTATG TCCAGCCACT GCCTTCTGAA GATCTGGCTT CTGATTTTTC
  R
  GTCCCTGTAA CTTGCCTCTT TCTCCACAGA AGTCTTACTG CATGGACATA TTTTTGAGCA
  CGAAGACTCT TTGTCTTGAC TTCGTTTTTC TTCCCTGGAT GGACCCTTCA TGACATCAAC
  TCGGGAAAAA GGATCCTCTG AACTGGCTGA GCCCTCAGTG GGTTCCATAG TGACTGTCTT
  GCGTAGAACC TATAGGCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135875954	ENSMUSSNP3269970	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320958554	CHEV_3_127652440	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47016516					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127743171 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	201 bp downstream
Rr584909	regulatory region 584909	902 bp distal
Rr584910	regulatory region 584910	103 bp distal
Rr584911	regulatory region 584911	401 bp distal
Tssr31619	transcription start site region 31619	781 bp upstream