rs47008592 SNP Detail

Summary

• ID
  rs47008592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58205193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATT CCAAATTATG ACCTACTTTG
  Y
  ATTACTTTGT AGTTAGGAAA AAGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146390678	ENSMUSSNP369545	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321137342	CHEV_4_58218065	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47008592					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58205193 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14336	CpG island 14336			505 bp proximal
Rr592872	regulatory region 592872			1393 bp proximal
Rr592873	regulatory region 592873			1449 bp proximal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1			Intron
				Noncoding-Transcript-Variant
Tssr41870	transcription start site region 41870			1130 bp downstream
Tssr41871	transcription start site region 41871			1155 bp downstream
Tssr41872	transcription start site region 41872			1311 bp downstream
Tssr41873	transcription start site region 41873			1340 bp downstream
Tssr41874	transcription start site region 41874			1365 bp downstream
Tssr41875	transcription start site region 41875			1385 bp downstream
Tssr41876	transcription start site region 41876			1406 bp downstream
Tssr41877	transcription start site region 41877			1446 bp downstream
Tssr41878	transcription start site region 41878			1477 bp downstream
Tssr41879	transcription start site region 41879			1493 bp downstream
Tssr41880	transcription start site region 41880			1575 bp downstream