rs46999795 SNP Detail

Summary

• ID
  rs46999795
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145812705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTACTGAGC CACCCCATCA
  GTCCAAATTT CTACTTTTTA AGTAGAAATT ATGCAATAAA AGGCTGTCTC AGCTTTTCAG
  ATGGAGCATT TTTCGTTCTA CTCTTCAGAA TCATAGATTC AGGTGGTGGA CGTCATCTGA
  TTCTCTTTTG GATGATTTCT CATCAGTTGA TCCCTCTCCA TTTTCTATCC CAGTTTCCTT
  Y
  GGCCAAAAGT ACTAAACAAC ACTGTAAACA TCACCCAGCT TCATACAGCT GCAGTAACCC
  AGTTACCGAG GTCGTGCTCG TGTGTGTGGC CCCCCACTAC TGCTTCCACA ATTACTGTCC
  ATTGCATATT TTATACAATG AATACTGTTA TTTATATATG CATAAAATGA TCAAGTTTTT
  TTCTCTATAC AAAGACATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61095959	NES16609920	PERLEGEN	MM_PANEL2	f	SNP		C	C	T	T	T	T		T	C	C	T		T
ss136042066	ENSMUSSNP189850	ENSEMBL	ENSEMBL_Sanger	f	SNP	C				T
ss321009522	CHEV_3_145769914	CHEVERUD	SCREENING_POP	f	SNP								T					C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46999795					SNP	C	C	C	T	T	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61095959	NES16609920	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145812705 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai3	dynein axonemal intermediate chain 3			Intron
				Noncoding-Transcript-Variant
Rr398111	regulatory region 398111			1041 bp upstream
Rr586924	regulatory region 586924			195 bp proximal
Rr586925	regulatory region 586925			1170 bp proximal
Tssr36027	transcription start site region 36027			1039 bp downstream
Tssr36028	transcription start site region 36028			1059 bp downstream
Tssr36029	transcription start site region 36029			1097 bp downstream