rs46992127 SNP Detail

Summary

• ID
  rs46992127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:150523460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGAAGGT ACAAGTAGTT
  ATTTATATCT TCTCACTTTA TGACAAACTT AAATAGAAAA CACATCTAAA TGTTTGTTTA
  TTTGATCTCA ATTTTCTTGT CCCGTAATCA ATCATGGTGG TTTTGAGTTT CCAGTTGTAG
  AAAAATAAAT GTCTTAAGTA TTCCTATATC AGAACCTACC TTTTTCCTAA GCCAGAGAAT
  R
  TAAGCCTCCC TAAAATCTGG GGTAGTGATA AGAGGCAGCC CCAAACATCA GTGACAATAG
  TGAAATTCAA CCTTAACTTT GTCAAGAATC ACTCACTCTA TATCAGCAAA TTAAAGATCT
  AAAAATGGGC TGAGAAGATG GGTCAGGAGG TATAGTCATG GCTGAGCAAA CACAAGGACT
  TCAGGTTATG CACACCCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61099730	NES16604058	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46992127					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61099730	NES16604058	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:150523460 () rs orientation: forward

Symbol	Name	Function Class
Rr587375	regulatory region 587375	1553 bp proximal