rs46990968 SNP Detail

Summary

• ID
  rs46990968
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:96982855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG GATGAAGGGG AAGTCTGCAG
  G
  GCTCTGGGCC AAAGCCCTAT CCTGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145438084	ENSMUSSNP1845978	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss322339979	CHEV_7_104482158	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46990968					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:96982855 () rs orientation: forward

Symbol	Name	Function Class
Kctd21	potassium channel tetramerisation domain containing 21	Intron
Rr400445	regulatory region 400445	1256 bp downstream
Rr651402	regulatory region 651402	1639 bp distal
Rr651403	regulatory region 651403	1311 bp distal
Rr651404	regulatory region 651404	1315 bp distal
Rr651405	regulatory region 651405	within coordinates
Tssr67964	transcription start site region 67964	1317 bp downstream
Tssr67965	transcription start site region 67965	997 bp downstream
Tssr73573	transcription start site region 73573	1553 bp upstream
Tssr73574	transcription start site region 73574	1534 bp upstream
Tssr73575	transcription start site region 73575	1506 bp upstream
Usp35	ubiquitin specific peptidase 35	1628 bp upstream