rs46990604 SNP Detail

Summary

• ID
  rs46990604
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101223828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCACGGAG GTATGCTGGG
  AAGGGTTTAT CTGGGCCCCG CCTCTTCCTG TGAATGAGCC AGCTAGCCAC CCCAGGGGCT
  TCCTCTCTGA GTCTGCACAT GTGGATTAGT AGGCAAGTCA GCTTGGGATA AGAAAGGAAA
  CAGGGGACAC AAATGAGGTG CTTACCTGTG AAACTTTTAA TGTTAATCAT TTAAAAATTA
  W
  TTATTTTATG TTTATGGGTG CTTTGCCTGC ATCTATTATA TATAGGGAAT GGGTGAAGTC
  CCGAGAGACT GAAGTCCCGA AGGAGTGGGT ACCGAGTGAC CTGGGTTGGC CATGTCAAGG
  ACATGGAATC GACCTAAGAG AAACTGGGGA TGTCTTTCCT CCAGGGCAGG TTTGGAAAGG
  CAAAGCCTTC CTTTACCCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135546535	ENSMUSSNP6964397	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
ss320851823	CHEV_3_101120435	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46990604					SNP	A	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101223828 () rs orientation: forward

Symbol	Name	Function Class
Gm64409	predicted gene, 64409	1888 bp upstream
Rr375462	regulatory region 375462	1389 bp downstream
Rr582007	regulatory region 582007	1584 bp proximal
Rr582008	regulatory region 582008	1707 bp proximal
Rr582009	regulatory region 582009	1792 bp proximal
Rr582010	regulatory region 582010	1899 bp proximal