rs46990070 SNP Detail

Summary

• ID
  rs46990070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130908529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGT AGCTCTGTCT ACTCGGTCAT
  Y
  CCCCTGCTGC CGAGCATTTA TTGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147598301	ENSMUSSNP407912	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46990070					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130908529 () rs orientation: forward

Symbol	Name	Function Class
Rr565176	regulatory region 565176	1011 bp proximal
Tssr26336	transcription start site region 26336	677 bp downstream
Tssr26337	transcription start site region 26337	1516 bp downstream
Tssr26338	transcription start site region 26338	1846 bp downstream
Tssr26339	transcription start site region 26339	1920 bp downstream