rs46989556 SNP Detail

Summary

• ID
  rs46989556
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8415101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATCCTT AAATCCTTTC
  AGTTTGGCCC CAAATTTCAC CTCCAAACTG AATTTGCTAT TTTCAAACAA TGATATTCAC
  AATTATTTTA ATATATTTAG TATGGTTATT CTTATTCTGT TCATAATACT GATACTAAAT
  TTTCTACATT TGTTACAAAT CATAGAATCT AATCTGTTGT ATATTTTTTT ACTCTAAGAA
  Y
  GTCAATATTA AATTCTTAAT TCCTATAGAG CTATAACTTC TGAAAAGATG AAATGGCCTG
  CCATTTTTCT CATTAGCTAA GTGTTTGTTT CTTACATATT CAAGACCACT ATAAAGATGG
  GCATTCTTCC ATTATAGAAA TTCTTTTCAT AACTTGAGTT TGCACACTCC TTGGCCACTG
  CTCCTACAGT TCCCAGGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132968417	ENSMUSSNP4985056	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46989556					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8415101 () rs orientation: forward

Symbol	Name	Function Class
1810015A16Rik	RIKEN cDNA 1810015A16 gene	within coordinates
Gm45062	predicted gene 45062	Intron
Rr626390	regulatory region 626390	1520 bp distal
Rr626391	regulatory region 626391	411 bp distal
Rr626392	regulatory region 626392	1820 bp proximal
Umad1	UMAP1-MVP12 associated (UMA) domain containing 1	Intron