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rs46986078 SNP Detail
Summary
  • ID
    rs46986078
  • Variation Type
    SNP
  • Alleles
    G
Genome Location and Flanking Sequence
  • Location
    Chr3:146128584 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTTGAAGAG AATTCGTCAG
    GGGCAGCATC CGAGAGAATG AGGCTTTGAG GAAACCACGT TGGAGTTCTT GTACATAAAT
    AAAAATAAAA ATGAATTTAA ACGAGGCACG TGATTTTATA TCTTAAAGTT GGTTGTAATC
    ACTTTAAACA AACGCTCACG GTTGCACTGA GAGGACTGCA GCTCCCATGT GACCTGTCAC
    G
    GCCCTTCTGA GGACACACTT CCTGACTCCT GTCAGTTTTG CTCAAGTGGC GTATTTCACG
    TTCCAGGAGC AGTTGGAAAC GTCCAGGCGG GAGATGATCG GGCTTCAAGA GAGAGACAGG
    CAGCTGCAGT GCAAGAACAG GAGTTTGCAT CAGCTCCTGA AGAATGAGAA AGATGAGGTG
    AGTTGTCTGC TCCTGTGTCT                                            
    
    G = G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
LG/J
SM/J
ss136044159 ENSMUSSNP1488785 ENSEMBL ENSEMBL_Sanger f SNP G
ss321010293 CHEV_3_146085793 CHEVERUD SCREENING_POP f SNP G G
SNP Consensus Information
SNP Consensus Type
A/J
LG/J
SM/J
rs46986078 SNP G G G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:146128584 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr587026 regulatory region 587026 1064 bp proximal
Ssx2ip SSX family member 2 interacting protein Intron

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory