rs46984208 SNP Detail

Summary

• ID
  rs46984208
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89156592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGTTGG CGCTCTTTGC
  CTCCGGCCTC ATCCACCGAG TTTGTGTCAC CACTTGGTAC GTATCTGACA GCTGGGCAAG
  CGGTGCAACA ACACCATGTC TTGTGGGACC AGATCTTCCT ATGGTGTTAA TAGTCCCTTC
  CCTTCCCACC ATATGCCACC TCCTCTGTCC CCTCCCCCCC ATTATTTTTT TCAAAGCTTT
  W
  TTTATTTATT ATATGTAACT ACACTGTAGC TGTCTTCAGA CACACCAGAA GAGGGCATCA
  GATCTCATTA CGGATGGTTG TGAGCCACCA TGTGGTTGCT GGGATTTGAA CTCGGGACCT
  ATGGAAGAGC AGTCAGTGCT CTTAACCCCT GAGCCATCTC CCCACCCCCA CCCCTTTTTT
  TTGTCCTTAG TTTCCCAGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135474299	ENSMUSSNP5976121	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46984208					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89156592 () rs orientation: forward

Symbol	Name	Function Class
Krtcap2	keratinocyte associated protein 2	Intron
Rr580001	regulatory region 580001	968 bp proximal
Rr580002	regulatory region 580002	1049 bp proximal
Rr580003	regulatory region 580003	1266 bp proximal
Rr580004	regulatory region 580004	1310 bp proximal