rs46982179 SNP Detail

Summary

• ID
  rs46982179
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86785487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGC TTCTCTCATG TAGAGAGCAA
  A
  CAAGGTCCTT CTGTGTCATT CTCAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133359570	ENSMUSSNP3421895	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321847371	CHEV_6_86758499	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46982179					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86785487 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr21	DNA Segment, Chr 6, Derry C. Roopenian 21	1579 bp distal
D6Mit29	DNA segment, Chr 6, Massachusetts Institute of Technology 29	1578 bp distal
Rr633520	regulatory region 633520	1582 bp distal
Rr633521	regulatory region 633521	1871 bp distal
Rr633522	regulatory region 633522	243 bp distal
Rr633523	regulatory region 633523	1307 bp proximal