rs46980539 SNP Detail

Summary

• ID
  rs46980539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117230819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAT GTGCATATGA TGTGCACATG
  Y
  GTTCAACGCT TGTATTCACG TATGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135690235	ENSMUSSNP6387487	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320899496	CHEV_3_117140088	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46980539					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117230819 () rs orientation: forward

Symbol	Name	Function Class
Rr583844	regulatory region 583844	1389 bp proximal
Rr583845	regulatory region 583845	1766 bp proximal