rs46980346 SNP Detail

Summary

• ID
  rs46980346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27210615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTTACTC ACAGTTATTG
  TGCAATAAGC GCTAAGCGTC CAGTAAGGTA CGCTAGGAAT GAGACGGAAC AGACAAGAAC
  CTTGACCTCA TCCTGGAACT AGCTTTTATC CCACAAGCTT TCACAAAGAG AACAGTAATA
  AAAAAATAAC TGTCTGATTC TGAAGCTTTT TCAAGTGTTT TCCTACTCCT GAGTCTACAC
  R
  GCAACAATCT TTTTATTAGC ACACTTATAG ATAAGGTTAA AATGACTCGA TGGCATAGTA
  ACCCTGAACT TCTAAAGAAT AAACCTCGGG TACTGGTTTA TTTGCTTACT GTGACTAACC
  TCCTTTTAAA ATGCCCATAC TAATCCAGAC ACCTATAATC CCAGCACAGA GGCAGTAGAA
  ACAAGAGAAG ATCAAGACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60380479	NES15884375	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs46980346					SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380479	NES15884375	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27210615 () rs orientation: forward

Symbol	Name	Function Class
1700125G22Rik	RIKEN cDNA 1700125G22 gene	within coordinates
Rr374716	regulatory region 374716	196 bp downstream
Rr574354	regulatory region 574354	272 bp proximal