rs46973297 SNP Detail

Summary

• ID
  rs46973297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:33029982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTGTCC CCACTACACC
  CATTACAAAT GCCCCACTAA CAGAGAACCC CCGCCCTAGC TACCTCTCAT GGCGCTGAGC
  TCCTGTAGAT CACTGGGTCA TTCACTCAAC AAATATTCCA AACACCAAGT GCTGCCTCAT
  GACTCCTGGG ACACTTGTAT GAGCTGTCTA TACCTTAACC GGTACTTCTG TCTCAGGGCC
  Y
  AAATACAGTA GAAGTGAGAT AAGGAAGGGA GGATGGCTCT CAATAACTGT GCTCCCTGGA
  GACAAAGGCC ATCTCCTCTC TCAGACCACC AGGCAAATGA GAAAAGGGAA TAGCAACAGG
  CTTCATCTCC TGAAACCAGA GCCAGCTACA TTTTTTCTTG TTGCTTTATT TTGTTTTGTG
  ATTCTAGGGG TTGAACATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60876154	NES15979040	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46973297					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60876154	NES15979040	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33029982 () rs orientation: forward

Symbol	Name	Function Class
Chchd3	coiled-coil-helix-coiled-coil-helix domain containing 3	Intron
Rr628161	regulatory region 628161	1039 bp distal