rs46971841 SNP Detail

Summary

• ID
  rs46971841
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185869845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGCATT GGAGGGTAGT
  GAACAACTCA CAGGGCTTCA TTCTTTCCTT CCACCACCTG GGTCATCTGG CTCAGCAACA
  ATTGCCCCTC CCCACTGATT CTTAATCCCA GCAGGAAAAA AAGTGATTCT TATTAATAAT
  ACTAATATAT TTATACACTG TTTATCATTT GTAAACCTCT TAGATATCTT TTAAAACATC
  S
  CGAGTAAACT TCGCATAGTT CTAGGCTATA GTCCTAAAAT TGGTTTAGGA AAATTAAGCA
  ATTAATTTAA ATCCATGGTG GCCAGCTTGT GGACTCAAGT TTAAGCTTTC TGTCCTACAT
  CACTTGCTTT ATAAATAATG AAAAGGGGGA AGTATTGGTG GGTACATACT AATTGTATCT
  CAGTCTTCAG TGGTGTGAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146452400	ENSMUSSNP5803546	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320182231	CHEV_1_187961527	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46971841					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185869845 () rs orientation: forward

Symbol	Name	Function Class
Rr425453	regulatory region 425453	312 bp distal
Rr425454	regulatory region 425454	196 bp proximal
Tssr10623	transcription start site region 10623	291 bp upstream