rs46969996 SNP Detail

Summary

• ID
  rs46969996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25643320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGAACT CACTCTGTAG
  ACCAGGCTGG CCTTGAACTC AGAAATCCAC CTGCCTCTGC CTTCCAAGTG CTGGGACTAA
  AGGCGTGCGA CACTGCTGCC CAGCTATGGT GGTCATTCTT ATTGAAACCA CCACACACTC
  ATGCACATAA AATAAGCAAA AACTTAAGAC AGTACAGAGC ATGATATCTA GCCTAGACTT
  R
  GAACTGGGTC TGGGATCGAA AGCCAGACTC TTCTGTCACC GTAATATGGG CTAGCAACGT
  CATGCTTCTG GACCATGTAA GCCAAAGGGA ACATGCGCTT CCGGTGTGGC CGCTTTTAGT
  ACACACATCT CAGGTGGGGT TTGTGATTTT AAGAGAAATT AGATAGAGCC TGTAATCCAA
  CATGCAGGAG GCAGGATCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60584152	NES16331118	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46969996					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60584152	NES16331118	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25643320 () rs orientation: forward

Symbol	Name	Function Class
Rr661058	regulatory region 661058	1850 bp distal
Tacc1	transforming, acidic coiled-coil containing protein 1	1248 bp downstream