rs46964994 SNP Detail

Summary

• ID
  rs46964994
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27163635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTAGCCT TACATGGGGC
  CACTCAGGTG GACCCAGTAA GGAGATGAGC CCAAGCTGAC CACCAGACCA GTGCCGGTAG
  GGCCTGGTCA GGGAGCTAGC CTTAGATGAG CACCAGTCTG GCACCACAAA GGCCTGGGGG
  AGTAGACCAT GCCTGAGAGG ACCCCTGCCC AGCACTATAA CACATGAGCT GGGCAGAGCA
  M
  GTGCTCCTGA GACCACTTCA GAGATAACCC CAGACACTCA GCGACCAAGG AGCCACTAAG
  TAGAGCAAGT AGGTGGTGGA GACTTGGAAG AGAAAGAGAA ACGGAAGGAC GTGGGCACAA
  TGAAGAGACA GAACTGGAGA CTCAGGGGTA GGAACAGCCT GATGTGAGCG GCCAGTGACG
  TCACCTGGAT CCTGGACAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60380581	NES15885381	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs46964994					SNP	A	A	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380581	NES15885381	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27163635 () rs orientation: forward

Symbol	Name	Function Class
Ect2	ect2 oncogene	Intron
Gm25152	predicted gene, 25152	391 bp downstream
Rr574345	regulatory region 574345	449 bp distal
Rr574346	regulatory region 574346	1462 bp proximal
Rr574347	regulatory region 574347	1586 bp proximal