rs46960868 SNP Detail

Summary

• ID
  rs46960868
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100690681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCATTTT GCTGAATGCT
  GATTTCCTGA ACCACCATGT TGTAGCCACC TTTTAGACCA TGATTTAGGC AAAAACCAAA
  TGAGCCTTCT TGGGAGGGAG GGGCTCAATT TCTTACTTCC ATAAAATGAG TTTCGTTTCT
  CCCCAATGCT CTCTTCACTA GGAGCTAGAA GGCTTAAAAG CAGCACATAG GCATGACTAG
  W
  ATTTATAGAA GCACCTGTCA ATACCACAAG GGCAGCAGCA AGGTCAGTAG CAGGTCTTTG
  TGTGATGCAT ATGATTGGCT GACCTGAGGC CTGGCTGGCA GTGTATGGCT TGTTCTTCTC
  TATAGTGTGT ACTTGACCTT AGAGACCTGC TTTTCTTAAA GCAAAAATAC ATACATCATC
  TGTATGTATG TATGTATGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147117522	ENSMUSSNP4399077	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46960868					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100690681 () rs orientation: forward

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	224 bp proximal