rs46959730 SNP Detail

Summary

• ID
  rs46959730
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58205260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAT AAATTACATT ACTTCTGTCA
  K
  ATGCTAAGCA TTTGTTTAGG AAGAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146390688	ENSMUSSNP978580	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46959730					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58205260 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14336	CpG island 14336			438 bp proximal
Rr592872	regulatory region 592872			1326 bp proximal
Rr592873	regulatory region 592873			1382 bp proximal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1			Intron
				Noncoding-Transcript-Variant
Tssr41870	transcription start site region 41870			1063 bp downstream
Tssr41871	transcription start site region 41871			1088 bp downstream
Tssr41872	transcription start site region 41872			1244 bp downstream
Tssr41873	transcription start site region 41873			1273 bp downstream
Tssr41874	transcription start site region 41874			1298 bp downstream
Tssr41875	transcription start site region 41875			1318 bp downstream
Tssr41876	transcription start site region 41876			1339 bp downstream
Tssr41877	transcription start site region 41877			1379 bp downstream
Tssr41878	transcription start site region 41878			1410 bp downstream
Tssr41879	transcription start site region 41879			1426 bp downstream
Tssr41880	transcription start site region 41880			1508 bp downstream