rs46959688 SNP Detail

Summary

• ID
  rs46959688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126391277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGACCCCG CCATGGCTTC
  GACCACCACC TGCACCCGGT TCACCGACGA GTATCAGCTC TTTGAGGAGC TCGGAAAGTA
  AGCGTCCCTG CCTGGCATCT CCTCCTCCCC ACGACCCCTC GTCTCCCTCG TGGGGATAGA
  GAGCCTGCGG GCCGAGGCGG GGAGACGGAC CCTGGCTTGG TGCGGGTGGG GCACACAGGG
  R
  AGGAAACCTT TGCCCTACTG TGGCGGGTGC TCCGAATTCC CAGCCCATCT TCTCGGGTCC
  TCCACCTCTC CACGGGGGAC TTAGTGAATT TATGATCTCT GCAGTTGTAG CTGTCATCCT
  GAGAAGTGTG CGCGCACGCG AGTGCGAATG TGTGTGTATG TGTGTTCGGA GAGGAAAGGA
  GATGCATGTA AAATGCAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135836841	ENSMUSSNP5100339	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320946583	CHEV_3_126300546	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46959688					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126391277 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Cpgi13785	CpG island 13785			within coordinates
Gm17225	predicted gene 17225			within coordinates
Rr367547	regulatory region 367547			1164 bp downstream
Rr397994	regulatory region 397994			1658 bp upstream
Rr584646	regulatory region 584646			204 bp distal
Rr584647	regulatory region 584647			721 bp distal
Rr584648	regulatory region 584648			609 bp distal
Rr584649	regulatory region 584649			within coordinates
Rr584650	regulatory region 584650			1734 bp proximal
Tssr31566	transcription start site region 31566			1285 bp downstream
Tssr31567	transcription start site region 31567			1256 bp downstream
Tssr31568	transcription start site region 31568			1209 bp downstream
Tssr31569	transcription start site region 31569			774 bp downstream
Tssr31570	transcription start site region 31570			642 bp downstream
Tssr31571	transcription start site region 31571			590 bp downstream
Tssr31572	transcription start site region 31572			515 bp downstream
Tssr31573	transcription start site region 31573			374 bp downstream
Tssr31574	transcription start site region 31574			215 bp downstream
Tssr31575	transcription start site region 31575			193 bp downstream