rs46958960 SNP Detail

Summary

• ID
  rs46958960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:36586176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATATTTTT AAGAGTGCCT
  TATCTATTTA CAAAGGAAAA TCATTCTATG TTTCTTCTCT TCCTGTCCTG CAGCATTGTA
  AAACTATTCC TACTTTTTCT CTAGCTGGTA ATCCGGTTGT TATATTGATA TATACTGTGA
  ATTTTCTTAA GTGGTTTAGA GATATTTATG AAATGCTTAT AGACAGGCTG CTAAGTTATG
  Y
  ATCTAACCCT GAGAGAAATA TGGTTTCTGT AAAATTATAA ATAATGATAA CTCTGGAATC
  AAGCAAATAC TGCTATAACC CCCCCCCCAA AAAAATATGC AGGTAATGCC GTGTTCTTAT
  TTCATGACTG TGGGGAACCT GGGCGTGAAA TAAGTTGCCC AGAAGCAGAG GGAAAACTTA
  GTCTCTGAAT TGCTGCGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60877862	NES15971686	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs46958960					SNP	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60877862	NES15971686	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36586176 () rs orientation: forward

Symbol	Name	Function Class
Rr628550	regulatory region 628550	314 bp distal