rs46946276 SNP Detail

Summary

• ID
  rs46946276
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52892101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGAAACT TCTCGCATTA
  ATAAGCCCTG CCTGGTCCCT CAGGAGGGAT GGATGTTGTA TTTTAGATAG TGTACTTTCC
  AGGTCTAAGT GCAGCAGGCT GTAACTTCCT TCCTTCCTTA TTCTCTCGGT GTACTGATGC
  TTTCCTTTAG TGCACAGACA CGTTTCCAAG GCTCGCTGTA AATATCTGCT CATGGCACAC
  R
  CATCAGCTGT GGCTCTGTTT CTATTAACTG ATCATTTTTC TCTTTTGGGT TCACGTTTCC
  TGTTCCTAAG CAGTCCTGGG TGTTCCTACA GTTCTGGATG GACTCATGTC TTCATGTACG
  ACGCTCCCAG TCATCCTTCA AAGCAGTGAG TTCTGCTAGG AAGTCAGTGA GCTGAGTTCA
  AGATTAGCAT GGTATTTAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135180509	ENSMUSSNP2086670	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320766342	CHEV_3_52788602	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46946276					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52892101 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	853 bp upstream
Rr576615	regulatory region 576615	369 bp distal
Rr576616	regulatory region 576616	751 bp proximal