rs46944423 SNP Detail

Summary

• ID
  rs46944423
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:167030088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCC TCCCGCTCCC GCAGCGTCTC
  R
  GCCTCCCGCT TCAGCTCCTC GTTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148261812	ENSMUSSNP4888596	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46944423					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167030088 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1110018N20Rik	RIKEN cDNA 1110018N20 gene			581 bp upstream
Kcnb1	potassium voltage gated channel, Shab-related subfamily, member 1			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr570485	regulatory region 570485			26 bp proximal
Rr570486	regulatory region 570486			44 bp proximal
Rr570487	regulatory region 570487			640 bp proximal
Rr570488	regulatory region 570488			1468 bp proximal
Rr570489	regulatory region 570489			1977 bp proximal
Tssr21792	transcription start site region 21792			1492 bp upstream
Tssr21793	transcription start site region 21793			1511 bp upstream
Tssr27748	transcription start site region 27748			456 bp downstream
Tssr27749	transcription start site region 27749			603 bp downstream
Tssr27750	transcription start site region 27750			619 bp downstream
Tssr27751	transcription start site region 27751			661 bp downstream
Tssr27752	transcription start site region 27752			1919 bp downstream
Tssr27753	transcription start site region 27753			1956 bp downstream