rs46936316 SNP Detail

Summary

• ID
  rs46936316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65833585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCAATTA AAATAGTAAA
  AAAAGTAACA AAACACAGGC TGCATTCATT CCACTAGAGA CTACATTGGC ATCGCTCTAC
  AGTCAGACAA AGGATAGATT GTGTGGAAAG ACATCTCTGT TCATAAATTC CATACCATCT
  GGAGACACAC CAAGGCAAAA CTTAATGCAA ACATTTATTT TCCAAAGGGA GAAATGATGG
  Y
  TGGAAGAGGT GGGCAGGAGT GAGCCCTGGT GCTGAAGAGC AGGGCACCAT GGGAAGTTTT
  CTCCATAAGA AAGAGATGGG GTTACCGATC CTCTGAGAGT GTTGGCATGC CGTCTGAAGT
  CAGACAGAGA CATTGAAAGT GAGGAGAAGG TGAGCCCTCC GGTGCTGGGT AAGGCTGAGG
  TGACTTACTA TAGACCACGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60417566	NES15922264	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46936316					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60417566	NES15922264	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65833585 () rs orientation: forward

Symbol	Name	Function Class
Gm35039	predicted gene, 35039	within coordinates
Gm65138	predicted gene, 65138	within coordinates
Rr577757	regulatory region 577757	506 bp distal
Rr577758	regulatory region 577758	1204 bp proximal
Rr577759	regulatory region 577759	1696 bp proximal
Tssr33470	transcription start site region 33470	216 bp upstream