rs46932420 SNP Detail

Summary

• ID
  rs46932420
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147603318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTCTTAGA GGATGGGCTT GTTGGTTGCA
  AACATGGCTA TATTTCTCTG GTGGCAGGTT CAAAGCTGAT ACAATTCACA TCCATCCATG
  GTTTTTAACT CTGCTTTTTA ATCACTGTGC TAGTCAGATT CTTTGCCATT GGAGATTATA
  C
  ATCCACTGGG AGCTTTTTAG ATATTAGTCC CATACGAACC ACTGGAGTTT TGATTGAATC
  TTAAACAATC TTAAACAATA TTTTAGCAAT TTGAGGGGCT GTGGGACTCT TTTATTCAGT
  ACAGGAGGAT GGGAAGCACG TGAAAGGGGA                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321414780	CHEV_4_146892970	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46932420					SNP	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss147966877	ENSMUSSNP3882120	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147603318 () rs orientation: forward

Symbol	Name	Function Class
Gm15951	predicted gene 15951	1607 bp downstream
Gm69897	predicted gene, 69897	within coordinates
Rr398830	regulatory region 398830	772 bp upstream
Rr604494	regulatory region 604494	124 bp proximal
Rr604495	regulatory region 604495	1231 bp proximal