rs46921450 SNP Detail

Summary

• ID
  rs46921450
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83807693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTA GACGTATTCC AATACTCAAT
  K
  TCCTCTGGCT TCCAAAATAA AACCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133350474	ENSMUSSNP3758	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321844841	CHEV_6_83780705	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46921450					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83807693 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17619	CpG island 17619	491 bp proximal
Gm68055	predicted gene, 68055	562 bp upstream
Paip2b	poly(A) binding protein interacting protein 2B	Intron
Rr399726	regulatory region 399726	1009 bp upstream
Rr632951	regulatory region 632951	125 bp proximal
Rr632952	regulatory region 632952	573 bp proximal
Rr632953	regulatory region 632953	712 bp proximal
Rr632954	regulatory region 632954	1020 bp proximal
Rr632955	regulatory region 632955	1040 bp proximal
Tssr61712	transcription start site region 61712	972 bp downstream
Tssr61713	transcription start site region 61713	994 bp downstream
Tssr61714	transcription start site region 61714	1025 bp downstream